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DRAFT - Fix missing GDAL and dependencies #2

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DRAFT - Fix missing GDAL and dependencies #2

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@newmana newmana commented Apr 19, 2024 •
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DRAFT

  • Added GDAL 1.9 (need for Fiona)
  • Removed fingerprints - just kept version
  • Used better name.
  • Added instructions.

@newmana newmana changed the title Fix missing GDAL and dependencies DRAFT!!! - Fix missing GDAL and dependencies Apr 22, 2024
newmana and others added 27 commits April 22, 2024 16:41
@newmana
Test.
b5bd0dd
@newmana
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5369908
@newmana
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b473167
@newmana
Fix for ICU.
5139fa6
@newmana
Fix deprecation warning.
9497262
@newmana
Add how to generate a transformation matrix.
867b5f1
@newmana
Make .py files executable and add alignment script and instructions
09c6e34
@newmana
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e8244e3
@newmana
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61b455d
@newmana
Improve instructions
82dad4f
@newmana
Use new API
f4341ca
@newmana
Use new API for spatialdata
d2531a8
@newmana
Reformat.
1ecd1be
@newmana
Display remove vs total files and improve logic
b1d22ad
@newmana
Show previous spatialdata api usage
a604a41
@newmana
Show previous spatialdata api usage
ede45a9
@newmana
Save working 0.0.9 version.
5b927f1
@newmana
Save working 0.0.9 version.
3fc03dc
@newmana
Set to use 0.0.9 of spatial data
b345c2b
@newmana
Merge branch 'andrew_n_hovernet' of github.com:BiomedicalMachineLearn…
181c83c 
…ing/STimage into andrew_n_hovernet
@newmana
Using spatialdata 0.0.9 as default.
5965c71
@newmana
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4aca780
@newmana
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c56a012
@newmana
Fix formatting.
d202b31
@newmana
Working
5b69b0d
@newmana
Merge branch 'andrew_n_hovernet' of github.com:BiomedicalMachineLearn…
1707e81 
…ing/STimage into andrew_n_hovernet
@newmana
Cleanup and get pipeline for creating masks into notebook
9661716
@newmana newmana changed the title DRAFT!!! - Fix missing GDAL and dependencies DRAFT - Fix missing GDAL and dependencies Apr 28, 2024
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@newmana